Package: spliceTerrain 0.99.0

Lachlan Baer

spliceTerrain: Sashimi-Style RNA-seq Coverage and Junction Visualisation

Provides tools to visualise RNA sequencing alignments as sashimi-style plots showing fragment coverage and splice junction usage across genomic regions. Alignments from BAM files are summarised into coverage tracks and junction arcs, which can be displayed alongside transcript annotations. Plots can use compressed genomic coordinates to emphasise observed or annotated features and support visual inspection of local splicing variation across samples.

Authors:Lachlan Baer [aut, cre]

spliceTerrain_0.99.0.tar.gz
spliceTerrain_0.99.0.zip(r-4.7-any)spliceTerrain_0.99.0.zip(r-4.6-any)spliceTerrain_0.99.0.zip(r-4.5-any)
spliceTerrain_0.99.0.tgz(r-4.6-any)spliceTerrain_0.99.0.tgz(r-4.5-any)
spliceTerrain_0.99.0.tar.gz(r-4.7-any)spliceTerrain_0.99.0.tar.gz(r-4.6-any)
spliceTerrain_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
spliceTerrain/json (API)

# Install 'spliceTerrain' in R:

install.packages('spliceTerrain', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/baerlachlan/spliceterrain/issues

Pkgdown/docs site:https://baerlachlan.github.io

On CRAN:

alignment alternativesplicing coverage genomicvariation rnaseq sequencing splicedalignment transcriptomics visualization

4.06 score 3 scripts 1 exports 40 dependencies

Last updated from:f25d497f8e. Checks:1 NOTE, 7 OK, 2 ERROR. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	196
linux-devel	OK	253
source / vignettes	OK	270
linux-release	OK	313
macos-release	OK	239
macos-oldrel	ERROR	137
windows-devel	OK	266
windows-release	OK	230
windows-oldrel	ERROR	171
wasm-release	OK	151