Package: loopcityData 0.99.0

Sarah Parker

loopcityData: Experimental Data for the loopcity Package

Provides Hi-C loop calls and chromatin interaction data used in examples and vignettes for the loopcity package. Includes GM12878 Hi-C loop calls at 10 kb resolution (Rao et al. 2014, GSE63525), shipped directly as GInteractions objects. K562 Hi-C contact matrices and CTCF and H3K27ac ChIP-seq signal tracks from Bond et al. 2023 (GSE214123, GSE213908) are hosted on ExperimentHub and retrieved on demand.

Authors:Sarah Parker [aut, cre], JP Flores [aut]

loopcityData_0.99.0.tar.gz
loopcityData_0.99.0.zip(r-4.7-any)loopcityData_0.99.0.zip(r-4.6-any)loopcityData_0.99.0.zip(r-4.5-any)
loopcityData_0.99.0.tgz(r-4.6-any)loopcityData_0.99.0.tgz(r-4.5-any)
loopcityData_0.99.0.tar.gz(r-4.7-any)loopcityData_0.99.0.tar.gz(r-4.6-any)
loopcityData_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
loopcityData/json (API)

# Install 'loopcityData' in R:

install.packages('loopcityData', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jpflores-13/loopcitydata/issues

On CRAN:

experimenthub experimentdata homo_sapiens_data sequencingdata

3.00 score 7 scripts 4 exports 69 dependencies

Last updated from:e6541c038f. Checks:1 NOTE, 7 WARNING, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	161
linux-devel	WARNING	173
source / vignettes	OK	278
linux-release	WARNING	176
macos-release	WARNING	157
macos-oldrel	WARNING	173
windows-devel	WARNING	141
windows-release	WARNING	133
windows-oldrel	WARNING	137
wasm-release	OK	117