Package: saintexpress 0.99.0

Witold Wolski

saintexpress: Pure R Implementation of SAINTexpress

A pure R implementation of the SAINTexpress scoring engines for affinity purification-mass spectrometry data, covering both the spectral-count and intensity models, together with validation of SAINT input tables. The output mirrors the native SAINTexpress 'list.txt' format, so protein-protein interactions can be scored without external binaries. The underlying method is described in Teo et al. (2014) <doi:10.1016/j.jprot.2013.10.023>.

Authors:Witold Wolski [cre], Alexey Nesvizhskii [aut], Hyungwon Choi [aut, cph], Damian Fermin [aut, cph]

saintexpress_0.99.0.tar.gz
saintexpress_0.99.0.zip(r-4.7-any)saintexpress_0.99.0.zip(r-4.6-any)saintexpress_0.99.0.zip(r-4.5-any)
saintexpress_0.99.0.tgz(r-4.6-any)saintexpress_0.99.0.tgz(r-4.5-any)
saintexpress_0.99.0.tar.gz(r-4.7-any)saintexpress_0.99.0.tar.gz(r-4.6-any)
saintexpress_0.99.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
saintexpress/json (API)

# Install 'saintexpress' in R:

install.packages('saintexpress', repos = c('https://biocstaging.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/prolfqua/saintexpress/issues

Pkgdown/docs site:https://prolfqua.github.io

On CRAN:

massspectrometry proteomics software

3.40 score 2 scripts 2 exports 0 dependencies

Last updated from:8731469af7. Checks:1 WARNING, 9 OK. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	131
linux-devel	OK	135
source / vignettes	OK	170
linux-release	OK	128
macos-release	OK	91
macos-oldrel	OK	105
windows-devel	OK	61
windows-release	OK	67
windows-oldrel	OK	88
wasm-release	OK	101